eroma2014 [Thu, 12 May 2022 19:42:39 +0000 (15:42 -0400)]
Increased the size of uploading files for MIGA gateway
Marcus Christie [Wed, 11 May 2022 21:32:50 +0000 (17:32 -0400)]
Ansible: disabling usd deploy until we get valid certs
eroma2014 [Mon, 25 Apr 2022 19:14:11 +0000 (15:14 -0400)]
Removed CIRC email from the notification list.
Marcus Christie [Fri, 15 Apr 2022 17:44:36 +0000 (13:44 -0400)]
Ansible: trecx app id for prod amos gateway
Marcus Christie [Wed, 13 Apr 2022 18:31:51 +0000 (14:31 -0400)]
Ansible: production branch of lrose-sgci django app
Marcus Christie [Wed, 6 Apr 2022 21:36:07 +0000 (17:36 -0400)]
Ansible: global floods - django app and geo db config
Marcus Christie [Wed, 6 Apr 2022 21:04:54 +0000 (17:04 -0400)]
AIRAVATA-3411 Ansible: tusd_upload_dir for prod inventory
PJ Fanning [Tue, 5 Apr 2022 13:43:11 +0000 (15:43 +0200)]
AIRAVATA-3590 remove xmlbeans
PJ Fanning [Thu, 17 Mar 2022 12:42:39 +0000 (13:42 +0100)]
AIRAVATA-3590 upgrade log4j and commons-io
PJ Fanning [Thu, 17 Mar 2022 13:24:53 +0000 (14:24 +0100)]
update versions
PJ Fanning [Thu, 17 Mar 2022 13:19:25 +0000 (14:19 +0100)]
jackson 2.9.10.8
Eroma Abeysinghe [Mon, 4 Apr 2022 17:23:00 +0000 (13:23 -0400)]
Update email-config.yaml.j2
Adding HTCONDOR jetstream cluster email for monitoring
Dimuthu Wannipurage [Mon, 4 Apr 2022 13:53:45 +0000 (09:53 -0400)]
Commenting out htcondor email configs
Dimuthu Wannipurage [Mon, 4 Apr 2022 13:46:19 +0000 (09:46 -0400)]
Merge branch 'htcondor-new'
# Conflicts:
# modules/orchestrator/orchestrator-service/src/main/java/org/apache/airavata/orchestrator/server/OrchestratorServerHandler.java
Dimuthu Wannipurage [Mon, 4 Apr 2022 13:41:20 +0000 (09:41 -0400)]
Updating Helix version
Marcus Christie [Mon, 21 Mar 2022 13:42:26 +0000 (09:42 -0400)]
Ansible: Updating Helix download URLs
Marcus Christie [Mon, 21 Mar 2022 13:35:43 +0000 (09:35 -0400)]
Merge pull request #276 from apache/AIRAVATA-3549
Fetching intermediate outputs for an running experiment
Marcus Christie [Fri, 11 Mar 2022 23:02:51 +0000 (18:02 -0500)]
Ansible: update/downgrade zabbix agent to 4.0.x
Eroma Abeysinghe [Fri, 11 Mar 2022 19:56:07 +0000 (14:56 -0500)]
Update email-config.yaml.j2
Added Pinnacle UCMerced cluster email for monitoring.
Marcus Christie [Mon, 7 Mar 2022 22:38:51 +0000 (17:38 -0500)]
Ansible: pubad django app config
Marcus Christie [Thu, 3 Mar 2022 20:32:17 +0000 (15:32 -0500)]
Ansible: disabling global floods app until we get it working
Marcus Christie [Mon, 28 Feb 2022 22:22:00 +0000 (17:22 -0500)]
AIRAVATA-3585 update regex to include React generated files
Eroma Abeysinghe [Mon, 21 Feb 2022 17:32:25 +0000 (12:32 -0500)]
Update email-config.yaml.j2
Added Slurm <slurm@br003.ib.bridges2.psc.edu> for email monitoring
Marcus Christie [Wed, 16 Feb 2022 22:33:15 +0000 (17:33 -0500)]
AIRAVATA-3549 Only allow fetching intermediate outputs when job itself is ACTIVE
Marcus Christie [Wed, 16 Feb 2022 14:29:32 +0000 (09:29 -0500)]
AIRAVATA-3549 Allow users with READ access to get intermediate output status
Marcus Christie [Thu, 10 Feb 2022 18:57:12 +0000 (13:57 -0500)]
AIRAVATA-3549 code simplification, relying on final COMPLETED process status
Marcus Christie [Thu, 10 Feb 2022 16:13:34 +0000 (11:13 -0500)]
AIRAVATA-3549 Add CompletingTask to get COMPLETED status on intermediate output fetching process
Also updated Orchestrator to not update experiment status when receiving
an intermediate output fetching process status event.
Marcus Christie [Thu, 10 Feb 2022 15:00:43 +0000 (10:00 -0500)]
AIRAVATA-3549 When fetching intermediate URI_COLLECTION, update process output with data product URIs
Dimuthu Wannipurage [Thu, 3 Feb 2022 17:55:28 +0000 (12:55 -0500)]
Merge branch 'ultrascan-mainteinence'
Marcus Christie [Wed, 26 Jan 2022 21:29:36 +0000 (16:29 -0500)]
AIRAVATA-3570 Ansible: include web component build dir
Marcus Christie [Wed, 26 Jan 2022 19:48:12 +0000 (14:48 -0500)]
AIRAVATA-3549 Add intermediate output methods for all users
Marcus Christie [Tue, 18 Jan 2022 14:05:07 +0000 (09:05 -0500)]
Merge branch 'AIRAVATA-3550'
Marcus Christie [Tue, 18 Jan 2022 13:55:21 +0000 (08:55 -0500)]
Merge branch 'airavata-3319'
Dimuthu Wannipurage [Fri, 14 Jan 2022 18:53:53 +0000 (13:53 -0500)]
Fixing the issue of standard out and error files are not getting registered
Dimuthu Wannipurage [Fri, 14 Jan 2022 04:06:29 +0000 (23:06 -0500)]
Avoiding premature helix manager closure
Dimuthu Wannipurage [Fri, 14 Jan 2022 03:49:04 +0000 (22:49 -0500)]
Gracefully cleaning up the helix manager to avoid stale zookeeper connections
Dimuthu Wannipurage [Fri, 14 Jan 2022 01:45:20 +0000 (20:45 -0500)]
Relevant changes from htcondor branch
Marcus Christie [Fri, 7 Jan 2022 22:27:51 +0000 (17:27 -0500)]
AIRAVATA-3549 Add method to check on status of intermediate output fetching
Marcus Christie [Fri, 7 Jan 2022 17:25:18 +0000 (12:25 -0500)]
AIRAVATA-3549 Orch: update intermediate output fetching process to FAILED if fails to launch
Marcus Christie [Fri, 7 Jan 2022 17:24:24 +0000 (12:24 -0500)]
AIRAVATA-3549 API validation that experiment is executing and there aren't already executing intermediate output tasks
eroma2014 [Wed, 5 Jan 2022 20:57:17 +0000 (15:57 -0500)]
Updated the redirect URI for the geo gateway
Dimuthu Wannipurage [Thu, 24 Dec 2020 00:24:04 +0000 (19:24 -0500)]
Prioritizing external parameters when constructing the slurm script
Dimuthu Wannipurage [Wed, 23 Dec 2020 22:36:23 +0000 (17:36 -0500)]
Updating the slurm script to override parmaters with pre job commands
Dimuthu Wannipurage [Wed, 5 Jan 2022 07:16:10 +0000 (02:16 -0500)]
Ignoring sym links empty directories when building the archive
Dimuthu Wannipurage [Wed, 5 Jan 2022 01:19:44 +0000 (20:19 -0500)]
Merge branch 'AIRAVATA-3549' into develop
Dimuthu Wannipurage [Wed, 5 Jan 2022 00:46:23 +0000 (19:46 -0500)]
Optimizing the un-archiving process by separating out chain comands
Dimuthu Wannipurage [Tue, 4 Jan 2022 23:49:03 +0000 (18:49 -0500)]
Minor logging enhancement
Marcus Christie [Tue, 4 Jan 2022 21:08:15 +0000 (16:08 -0500)]
AIRAVATA-3549 Derive the parent process for intermediate output fetching process
Marcus Christie [Tue, 4 Jan 2022 21:03:32 +0000 (16:03 -0500)]
AIRAVATA-3549 Regenerated thrift stubs - removing parentProcessId
Dimuthu Wannipurage [Mon, 3 Jan 2022 03:53:12 +0000 (22:53 -0500)]
Minor enhancement
Dimuthu Wannipurage [Mon, 3 Jan 2022 02:02:47 +0000 (21:02 -0500)]
Merge branch 'AIRAVATA-3549' into develop
Dimuthu Wannipurage [Mon, 3 Jan 2022 02:02:07 +0000 (21:02 -0500)]
Fine grained state publish mechanism for helix tasks
Dimuthu Wannipurage [Mon, 3 Jan 2022 00:03:20 +0000 (19:03 -0500)]
Merge branch 'AIRAVATA-3549' into develop
Dimuthu Wannipurage [Mon, 3 Jan 2022 00:01:04 +0000 (19:01 -0500)]
Adding a parent process id field to fetch intermediate outputs as they are bound to parent process data path
Dimuthu Wannipurage [Sat, 1 Jan 2022 23:52:49 +0000 (18:52 -0500)]
Merge branch 'AIRAVATA-3549' into develop
# Conflicts:
# modules/airavata-helix/helix-spectator/src/main/java/org/apache/airavata/helix/impl/task/TaskContext.java
Dimuthu Wannipurage [Sat, 1 Jan 2022 23:49:11 +0000 (18:49 -0500)]
Making task context load on demand
Dimuthu Wannipurage [Fri, 31 Dec 2021 06:54:58 +0000 (01:54 -0500)]
Merge branch 'AIRAVATA-3549' into develop
# Conflicts:
# modules/messaging/core/src/main/java/org/apache/airavata/messaging/core/impl/ExperimentConsumer.java
Dimuthu Wannipurage [Fri, 31 Dec 2021 06:53:42 +0000 (01:53 -0500)]
Fixing the bug in deserializing intermediate output event
Dimuthu Wannipurage [Fri, 31 Dec 2021 02:54:59 +0000 (21:54 -0500)]
Minor bug fix of missing intermediate output filter in ExperimentConsumer
Dimuthu Wannipurage [Thu, 30 Dec 2021 19:35:16 +0000 (14:35 -0500)]
Merge branch 'AIRAVATA-3549' into develop
Dimuthu Wannipurage [Fri, 17 Dec 2021 20:19:32 +0000 (15:19 -0500)]
Merge pull request #275 from apache/log4j-upgrade
Upgrading log4j v1 to log4j 2.16.0 to address recent security vulnerabilities
Dimuthu Wannipurage [Fri, 17 Dec 2021 05:27:43 +0000 (00:27 -0500)]
Merge branch 'log4j-upgrade' into develop
Dimuthu Wannipurage [Fri, 17 Dec 2021 05:26:57 +0000 (00:26 -0500)]
Adding mistakenly deleted api-server start code
Dimuthu Wannipurage [Fri, 17 Dec 2021 01:57:43 +0000 (20:57 -0500)]
Merge branch 'log4j-upgrade' into develop
Dimuthu Wannipurage [Fri, 17 Dec 2021 01:56:39 +0000 (20:56 -0500)]
Upgrading from log4j -> log4j2 + refactoring
Marcus Christie [Wed, 15 Dec 2021 23:04:25 +0000 (18:04 -0500)]
Merge branch 'AIRAVATA-3550' into develop
Marcus Christie [Wed, 15 Dec 2021 23:04:12 +0000 (18:04 -0500)]
AIRAVATA-3550 newer version of assembly plugin for faster api server assembly
Marcus Christie [Wed, 15 Dec 2021 21:54:03 +0000 (16:54 -0500)]
AIRAVATA-3549 Initial API/Orch changes for fetching intermediate outputs
Dimuthu Wannipurage [Wed, 15 Dec 2021 21:14:22 +0000 (16:14 -0500)]
Supporting intermediate transfers at helix level
Marcus Christie [Wed, 15 Dec 2021 20:37:53 +0000 (15:37 -0500)]
AIRAVATA-3549 Thrift stubs generated for fetchExperimentOutputs
Marcus Christie [Tue, 14 Dec 2021 17:23:25 +0000 (12:23 -0500)]
Ansible: removing beta.distantreader.scigap.org
Marcus Christie [Fri, 10 Dec 2021 21:49:06 +0000 (16:49 -0500)]
AIRAVATA-3319 Ansible: add more external IDP userinfo configs
eroma2014 [Fri, 3 Dec 2021 14:38:52 +0000 (09:38 -0500)]
Merge branch 'develop' of github.com:apache/airavata into develop
eroma2014 [Fri, 3 Dec 2021 14:38:23 +0000 (09:38 -0500)]
Adding Dev RNAMake gateway CILogon
Marcus Christie [Thu, 2 Dec 2021 23:44:21 +0000 (18:44 -0500)]
Merge branch 'master' into develop
eroma2014 [Fri, 3 Dec 2021 04:05:52 +0000 (23:05 -0500)]
Adding Dev RNAMake gateway
eroma2014 [Fri, 3 Dec 2021 04:05:04 +0000 (23:05 -0500)]
Adding Dev RNAMake gateway
Marcus Christie [Thu, 2 Dec 2021 23:44:01 +0000 (18:44 -0500)]
AIRAVATA-3546 Ansible: update certbot, ca certs
eroma2014 [Thu, 2 Dec 2021 17:56:44 +0000 (12:56 -0500)]
Adding Dev RNAMake gateway
Marcus Christie [Tue, 30 Nov 2021 22:23:20 +0000 (17:23 -0500)]
Merge branch 'AIRAVATA-3546' into develop
Marcus Christie [Tue, 30 Nov 2021 22:23:04 +0000 (17:23 -0500)]
AIRAVATA-3546 Update certbot, ca certs
eroma2014 [Tue, 9 Nov 2021 21:47:54 +0000 (16:47 -0500)]
Adding DeepPDB gateway SSH key and cilogon
eroma2014 [Tue, 9 Nov 2021 21:11:46 +0000 (16:11 -0500)]
Adding DeepPDB gateway
eroma2014 [Tue, 9 Nov 2021 20:13:13 +0000 (15:13 -0500)]
Adding DeepPDB gateway
Marcus Christie [Mon, 8 Nov 2021 14:14:45 +0000 (09:14 -0500)]
Merge branch 'airavata-3525'
Marcus Christie [Fri, 5 Nov 2021 18:57:25 +0000 (14:57 -0400)]
Ansible: adding global-floods-django-app to deploy
Marcus Christie [Fri, 29 Oct 2021 13:58:27 +0000 (09:58 -0400)]
Ansible: changing trecx-django-app git url
Marcus Christie [Thu, 21 Oct 2021 21:31:01 +0000 (17:31 -0400)]
Revert "Change in name of AMOS gateway"
This reverts commit
bd256279db788bd482d4927c9b2a7b9031c1c7c8.
Marcus Christie [Thu, 21 Oct 2021 20:27:52 +0000 (16:27 -0400)]
AIRAVATA-3533 Support redirecting from old HTTPS domain to new HTTPS domain
eroma2014 [Thu, 21 Oct 2021 17:47:11 +0000 (13:47 -0400)]
Change in name of AMOS gateway
eroma2014 [Fri, 15 Oct 2021 17:12:25 +0000 (13:12 -0400)]
Adding new scigateway.ucmerced.edu gateway with cilogon
eroma2014 [Fri, 15 Oct 2021 15:13:00 +0000 (11:13 -0400)]
Adding new scigateway.ucmerced.edu gateway with cilogon
eroma2014 [Wed, 13 Oct 2021 19:43:00 +0000 (15:43 -0400)]
Adding new scigateway.ucmerced.edu gateway
eroma2014 [Wed, 13 Oct 2021 19:42:23 +0000 (15:42 -0400)]
Adding new scigateway.ucmerced.edu gateway
eroma2014 [Wed, 13 Oct 2021 19:40:45 +0000 (15:40 -0400)]
Adding new scigateway.ucmerced.edu gateway
eroma2014 [Fri, 8 Oct 2021 18:03:57 +0000 (14:03 -0400)]
removed the alias added for amp gateway
eroma2014 [Fri, 8 Oct 2021 17:29:19 +0000 (13:29 -0400)]
Updating the AMP gateway new domain
Marcus Christie [Thu, 7 Oct 2021 20:49:40 +0000 (16:49 -0400)]
AIRAVATA-3524: workaround for timeout when adding all users to group
Marcus Christie [Wed, 6 Oct 2021 17:39:18 +0000 (13:39 -0400)]
Merge branch 'airavata-3525' into develop
Marcus Christie [Wed, 6 Oct 2021 17:37:24 +0000 (13:37 -0400)]
AIRAVATA-3525 Fix the OPTIONS setting for MySQL/MariaDB